API
Attribute of STMiner
| Attribute | Type | Description |
|---|---|---|
| adata | Anndata | Anndata for loaded spatial data |
| genes_patterns | dict | GMM model for each gene |
| genes_distance_aray | pd.DataFrame | Distance between each GMM |
| genes_labels | pd.DataFrame | Gene name and their pattern labels |
Methods of STMiner
load data
read_h5ad()
read_gem_file()
preprocess
fit_pattern()
fit model
fit_pattern()
build distance array & clustering
cluster()
visualization
plot_pattern()
plot_heatmap()